Journal:

Article Title: Comparative Genomic Analyses of the Bacterial Phosphotransferase System

doi: 10.1128/MMBR.69.4.608-634.2005

Figure Lengend Snippet: Bacteria with just one or two types of PTS enzyme II complexes

Article Snippet: Furthermore, since the functionality of its gene product has not been demonstrated, the significance of this observation has yet to be determined. table ft1 table-wrap mode="anchored" t5 TABLE 10. caption a7 Category Organism Abbreviation b Dha proteins c DhaM domain(s) d A Bradyrhizobium japonicum USDA 110 Bja All 3 IIA Dha Clostridium tetani E88 Cte All 3 IIA Dha Deinococcus radiodurans R1 Dra All 3 (DhaL is split) IIA Dha Enterococcus faecalis V583 Efa All 3 IIA Dha Mannheimia succiniciproducens MBEL55E Msu All 3 IIA Dha Mycoplasma mycoides subsp. mycoides SC strain PG1 Mmy All 3 IIA Dha Mycoplasma penetrans HF-2 Mpe All 3 IIA Dha Oceanobacillus iheyensis HTE831 Oih All 3 IIA Dha Fusobacterium nucleatum subsp. nucleatum ATCC 25586 Fnu All 3 IIA Dha Staphylococcus aureus subsp. aureus MRSA252 Sau All 3 IIA Dha Staphylococcus epidermidis ATCC 12228 Sep All 3 IIA Dha Streptomyces avermitilis MA-4680 Sav All 3 IIA Dha Thermoanaerobacter tengcongensis Tte All 3 IIA Dha B Corynebacterium diphtheriae NCTC 13129 Cdi All 3 IIA Dha -HPr Leifsonia xyli subsp. xyli CTCB07 Lxy All 3 IIA Dha -HPr Desulfovibrio vulgaris subsp. vulgaris Hildenborough Dvu All 3 IIA Dha -HPr-EI Escherichia coli CFT073 Eco All 3 IIA Dha -HPr-EIΔ Shigella flexneri 2a strain 2457T Sfl All 3 IIA Dha -HPr-EIΔ C Listeria innocua Clip11262 Lin All 3 (2) IIA Dha Listeria monocytogenes EGD-e Lmo All 3 (2) IIA Dha D Bacillus halodurans C-125 Bha All 3, DhaK IIA Dha Lactobacillus plantarum WCFS1 Lpl All 3, DhaK IIA Dha Lactococcus lactis subsp. lactis II1403 Lla All 3, DhaK IIA Dha Streptococcus agalactiae NEM316 Sag All 3, DhaK IIA Dha Streptococcus pyogenes MGAS10394 Spy All 3, DhaK IIA Dha E Propionibacterium acnes KPA171202 Pac All 3, DhaKL IIA Dha Streptomyces coelicolor A3 (2) Sco All 3, DhaKL IIA Dha F Mesorhizobium loti MAFF303099 Mlo All 3, DhaK (2), DhaL, DhaKL IIA Dha Open in a separate window a Organisms encoding at least one putative complete DHA PTS are grouped into six categories (A to F) based on the presence of additional complete or incomplete putative DHA PTSs or the presence of a putative ATP-dependent system. b Three-letter abbreviations used in phylogenetic analyses. c The occurrence of all three (DhaK, DhaL, and DhaM) proteins, believed to be required for a PTS-dependent DHA system, as well as additional proteins, is indicated.

Techniques:

Journal:

Article Title: Comparative Genomic Analyses of the Bacterial Phosphotransferase System

doi: 10.1128/MMBR.69.4.608-634.2005

Figure Lengend Snippet: Summary of complete PTSs in PTS-encoding organisms

Article Snippet: Furthermore, since the functionality of its gene product has not been demonstrated, the significance of this observation has yet to be determined. table ft1 table-wrap mode="anchored" t5 TABLE 10. caption a7 Category Organism Abbreviation b Dha proteins c DhaM domain(s) d A Bradyrhizobium japonicum USDA 110 Bja All 3 IIA Dha Clostridium tetani E88 Cte All 3 IIA Dha Deinococcus radiodurans R1 Dra All 3 (DhaL is split) IIA Dha Enterococcus faecalis V583 Efa All 3 IIA Dha Mannheimia succiniciproducens MBEL55E Msu All 3 IIA Dha Mycoplasma mycoides subsp. mycoides SC strain PG1 Mmy All 3 IIA Dha Mycoplasma penetrans HF-2 Mpe All 3 IIA Dha Oceanobacillus iheyensis HTE831 Oih All 3 IIA Dha Fusobacterium nucleatum subsp. nucleatum ATCC 25586 Fnu All 3 IIA Dha Staphylococcus aureus subsp. aureus MRSA252 Sau All 3 IIA Dha Staphylococcus epidermidis ATCC 12228 Sep All 3 IIA Dha Streptomyces avermitilis MA-4680 Sav All 3 IIA Dha Thermoanaerobacter tengcongensis Tte All 3 IIA Dha B Corynebacterium diphtheriae NCTC 13129 Cdi All 3 IIA Dha -HPr Leifsonia xyli subsp. xyli CTCB07 Lxy All 3 IIA Dha -HPr Desulfovibrio vulgaris subsp. vulgaris Hildenborough Dvu All 3 IIA Dha -HPr-EI Escherichia coli CFT073 Eco All 3 IIA Dha -HPr-EIΔ Shigella flexneri 2a strain 2457T Sfl All 3 IIA Dha -HPr-EIΔ C Listeria innocua Clip11262 Lin All 3 (2) IIA Dha Listeria monocytogenes EGD-e Lmo All 3 (2) IIA Dha D Bacillus halodurans C-125 Bha All 3, DhaK IIA Dha Lactobacillus plantarum WCFS1 Lpl All 3, DhaK IIA Dha Lactococcus lactis subsp. lactis II1403 Lla All 3, DhaK IIA Dha Streptococcus agalactiae NEM316 Sag All 3, DhaK IIA Dha Streptococcus pyogenes MGAS10394 Spy All 3, DhaK IIA Dha E Propionibacterium acnes KPA171202 Pac All 3, DhaKL IIA Dha Streptomyces coelicolor A3 (2) Sco All 3, DhaKL IIA Dha F Mesorhizobium loti MAFF303099 Mlo All 3, DhaK (2), DhaL, DhaKL IIA Dha Open in a separate window a Organisms encoding at least one putative complete DHA PTS are grouped into six categories (A to F) based on the presence of additional complete or incomplete putative DHA PTSs or the presence of a putative ATP-dependent system. b Three-letter abbreviations used in phylogenetic analyses. c The occurrence of all three (DhaK, DhaL, and DhaM) proteins, believed to be required for a PTS-dependent DHA system, as well as additional proteins, is indicated.

Techniques:

Journal:

Article Title: Comparative Genomic Analyses of the Bacterial Phosphotransferase System

doi: 10.1128/MMBR.69.4.608-634.2005

Figure Lengend Snippet: Organisms that encode a putative complete DHA PTS a

Article Snippet: Furthermore, since the functionality of its gene product has not been demonstrated, the significance of this observation has yet to be determined. table ft1 table-wrap mode="anchored" t5 TABLE 10. caption a7 Category Organism Abbreviation b Dha proteins c DhaM domain(s) d A Bradyrhizobium japonicum USDA 110 Bja All 3 IIA Dha Clostridium tetani E88 Cte All 3 IIA Dha Deinococcus radiodurans R1 Dra All 3 (DhaL is split) IIA Dha Enterococcus faecalis V583 Efa All 3 IIA Dha Mannheimia succiniciproducens MBEL55E Msu All 3 IIA Dha Mycoplasma mycoides subsp. mycoides SC strain PG1 Mmy All 3 IIA Dha Mycoplasma penetrans HF-2 Mpe All 3 IIA Dha Oceanobacillus iheyensis HTE831 Oih All 3 IIA Dha Fusobacterium nucleatum subsp. nucleatum ATCC 25586 Fnu All 3 IIA Dha Staphylococcus aureus subsp. aureus MRSA252 Sau All 3 IIA Dha Staphylococcus epidermidis ATCC 12228 Sep All 3 IIA Dha Streptomyces avermitilis MA-4680 Sav All 3 IIA Dha Thermoanaerobacter tengcongensis Tte All 3 IIA Dha B Corynebacterium diphtheriae NCTC 13129 Cdi All 3 IIA Dha -HPr Leifsonia xyli subsp. xyli CTCB07 Lxy All 3 IIA Dha -HPr Desulfovibrio vulgaris subsp. vulgaris Hildenborough Dvu All 3 IIA Dha -HPr-EI Escherichia coli CFT073 Eco All 3 IIA Dha -HPr-EIΔ Shigella flexneri 2a strain 2457T Sfl All 3 IIA Dha -HPr-EIΔ C Listeria innocua Clip11262 Lin All 3 (2) IIA Dha Listeria monocytogenes EGD-e Lmo All 3 (2) IIA Dha D Bacillus halodurans C-125 Bha All 3, DhaK IIA Dha Lactobacillus plantarum WCFS1 Lpl All 3, DhaK IIA Dha Lactococcus lactis subsp. lactis II1403 Lla All 3, DhaK IIA Dha Streptococcus agalactiae NEM316 Sag All 3, DhaK IIA Dha Streptococcus pyogenes MGAS10394 Spy All 3, DhaK IIA Dha E Propionibacterium acnes KPA171202 Pac All 3, DhaKL IIA Dha Streptomyces coelicolor A3 (2) Sco All 3, DhaKL IIA Dha F Mesorhizobium loti MAFF303099 Mlo All 3, DhaK (2), DhaL, DhaKL IIA Dha Open in a separate window a Organisms encoding at least one putative complete DHA PTS are grouped into six categories (A to F) based on the presence of additional complete or incomplete putative DHA PTSs or the presence of a putative ATP-dependent system. b Three-letter abbreviations used in phylogenetic analyses. c The occurrence of all three (DhaK, DhaL, and DhaM) proteins, believed to be required for a PTS-dependent DHA system, as well as additional proteins, is indicated.

Techniques: